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1

Major groove width variations in RNA structures determined by NMR and impact of13C residual chemical shift anisotropy and1H–13C residual dipolar coupling on refinement

Blanton S. Tolbert, Yasuyuki Miyazaki, Shawn Barton, Benyam Kinde, Patrice Starck, Rashmi Singh, Ad Bax, David A. Case, Michael F. Summers

Journal:

Journal of Biomolecular NMR

Year:

2010

Language:

english

File:

PDF, 1012 KB

english, 2010

2

Structure of a Conserved Retroviral RNA Packaging Element by NMR Spectroscopy and Cryo-Electron Tomography

Yasuyuki Miyazaki, Rossitza N. Irobalieva, Blanton S. Tolbert, Adjoa Smalls-Mantey, Kilali Iyalla, Kelsey Loeliger, Victoria D’Souza, Htet Khant, Michael F. Schmid, Eric L. Garcia, Alice Telesnitsky,

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 2.84 MB

english, 2010

3

Solution Structure of the HIV-1 Exon Splicing Silencer 3

Jeffrey D. Levengood, Carrie Rollins, Clay H.J. Mishler, Charles A. Johnson, Grace Miner, Prashant Rajan, Brent M. Znosko, Blanton S. Tolbert

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 2.20 MB

english, 2012

4

Methods for identifying and characterizing interactions involving RNA

Brett D. Blakeley, Sandra M. DePorter, Utpal Mohan, Ritwik Burai, Blanton S. Tolbert, Brian R. McNaughton

Journal:

Year:

2012

Language:

english

File:

PDF, 1.73 MB

english, 2012

5

Evidence for Direct Binding between HetR from Anabaena sp. PCC 7120 and PatS-5

Feldmann, Erik A., Ni, Shuisong, Sahu, Indra D., Mishler, Clay H., Risser, Douglas D., Murakami, Jodi L., Tom, Sasa K., McCarrick, Robert M., Lorigan, Gary A., Tolbert, Blanton S., Callahan, Sean M.,

Journal:

Year:

2011

Language:

english

File:

PDF, 4.45 MB

english, 2011

6

Direct Determination of Thiol p K a by Isothermal Titration Microcalorimetry

Tajc, Stephen G., Tolbert, Blanton S., Basavappa, Ravi, Miller, Benjamin L.

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 55 KB

english, 2004

7

The Active Site Cysteine of Ubiquitin-Conjugating Enzymes Has a Significantly Elevated p K a : Functional Implications †

Tolbert, Blanton S., Tajc, Stephen G., Webb, Helen, Snyder, Jessica, Nielsen, Jens E., Miller, Benjamin L., Basavappa, Ravi

Journal:

Year:

2005

Language:

english

File:

PDF, 465 KB

english, 2005

8

Regio-Selective Chemical-Enzymatic Synthesis of Pyrimidine Nucleotides Facilitates RNA Structure and Dynamics Studies

Alvarado, Luigi J., LeBlanc, Regan M., Longhini, Andrew P., Keane, Sarah C., Jain, Niyati, Yildiz, Zehra F., Tolbert, Blanton S., D'Souza, Victoria M., Summers, Michael F., Kreutz, Christoph, Dayie, T

Journal:

Year:

2014

Language:

english

File:

PDF, 828 KB

english, 2014

9

Differential Binding between PatS C-Terminal Peptide Fragments and HetR from Anabaena sp. PCC 7120

Feldmann, Erik A., Ni, Shuisong, Sahu, Indra D., Mishler, Clay H., Levengood, Jeffrey D., Kushnir, Yegor, McCarrick, Robert M., Lorigan, Gary A., Tolbert, Blanton S., Callahan, Sean M., Kennedy, Micha

Journal:

Year:

2012

Language:

english

File:

PDF, 2.96 MB

english, 2012

10

Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element

Rollins, Carrie, Levengood, Jeffrey D., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.91 MB

english, 2014

11

U GCU) 2 : Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs †,‡

Tolbert, Blanton S., Kennedy, Scott D., Schroeder, Susan J., Krugh, Thomas R., Turner, Douglas H.

Journal:

Year:

2007

Language:

english

File:

PDF, 815 KB

english, 2007

12

A

Hammond, Nicholas B., Tolbert, Blanton S., Kierzek, Ryszard, Turner, Douglas H., Kennedy, Scott D.

Journal:

Year:

2010

Language:

english

File:

PDF, 4.05 MB

english, 2010

13

Back Cover: Regio-Selective Chemical-Enzymatic Synthesis of Pyrimidine Nucleotides Facilitates RNA Structure and Dynamics Studies ({JABT} 30/2014)

Alvarado, Luigi J., LeBlanc, Regan M., Longhini, Andrew P., Keane, Sarah C., Jain, Niyati, Yildiz, Zehra F., Tolbert, Blanton S., D'Souza, Victoria M., Summers, Michael F., Kreutz, Christoph, Dayie, T

Journal:

Year:

2014

File:

PDF, 836 KB

2014

14

High-affinity interaction of hnRNP A1 with conserved RNA structural elements is required for translation and replication of enterovirus 71

Levengood, Jeffrey D., Tolbert, Michele, Li, Mei-Ling, Tolbert, Blanton S.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

15

Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1

Jain, Niyati, Morgan, Christopher E., Rife, Brittany D., Salemi, Marco, Tolbert, Blanton S.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 3.63 MB

english, 2015

16

ChemInform Abstract: Methods for Identifying and Characterizing Interactions Involving RNA

Blakeley, Brett D., DePorter, Sandra M., Mohan, Utpal, Burai, Ritwik, Tolbert, Blanton S., McNaughton, Brian R.

Journal:

Year:

2013

File:

PDF, 18 KB

2013

17

Rules of RNA specificity of hnRNP A1 revealed by global and quantitative analysis of its affinity distribution

Jain, Niyati, Lin, Hsuan-Chun, Morgan, Christopher E., Harris, Michael E., Tolbert, Blanton S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

18

Structural Regulation of Cap-Independent Translation in Enterovirus 71

Tolbert, Michele, Morgan, Christopher E., Li, Mei-Ling, Tolbert, Blanton S.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 41 KB

english, 2017

19

Structural Insights to the 3′ UTR of Gait Elements

Wells, Nancy, Tolbert, Blanton S.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 48 KB

english, 2017

20

NMR Studies of Conformational Selection of hnRNP H on RNA Splicing

Chiu, Liang-Yuan, Penumutchu, Srinivas, Tolbert, Blanton S.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

21

Mechanistic Insights into Functional Protein-RNA Interactions Involved in Viral Replication

Tolbert, Blanton S.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 69 KB

english, 2017

22

HnRNP A1 Alters the Structure of a Conserved Enterovirus IRES Domain to Stimulate Viral Translation

Tolbert, Michele, Morgan, Christopher E., Pollum, Marvin, Crespo-Hernández, Carlos E., Li, Mei-Ling, Brewer, Gary, Tolbert, Blanton S.

Journal:

Journal of Molecular Biology

Year:

2017

Language:

english

File:

PDF, 1.41 MB

english, 2017

23

Conserved structures formed by heterogeneous RNA sequences drive silencing of an inflammation responsive post-transcriptional operon

Basu, Abhijit, Jain, Niyati, Tolbert, Blanton S., Komar, Anton A., Mazumder, Barsanjit

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 10.59 MB

english, 2017

24

Idiosyncrasies of hnRNP A1-RNA recognition: Can binding mode influence function

Levengood, Jeffrey D., Tolbert, Blanton S.

Journal:

Seminars in Cell & Developmental Biology

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

25

Structure and Conformational Dynamics of the Splicing Factor hnRNP H

Chiu, Liang-Yuan, Tolbert, Blanton S., Rao Penumutuchu, Srinivasa

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 45 KB

english, 2018

26

Application of bioconjugation chemistry on biosensor fabrication for detection of TAR-DNA binding protein 43

Dai, Yifan, Wang, Chunlai, Chiu, Liang-Yuan, Abbasi, Kevin, Tolbert, Blanton S., Sauvé, Geneviève, Yen, Yun, Liu, Chung-Chiun

Journal:

Biosensors and Bioelectronics

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

27

Differential Conformational Dynamics Encoded by the Inter-qRRM linker of hnRNP H

Penumutchu, Srinivasa, Chiu, Liang-Yuan, Meagher, Jennifer L., Hansen, Alexandar L., Stuckey, Jeanne A., Tolbert, Blanton S.

Journal:

Journal of the American Chemical Society

Year:

2018

Language:

english

File:

PDF, 23.13 MB

english, 2018

28

Nanoparticle based simple electrochemical biosensor platform for profiling of protein-nucleic acid interactions

Dai, Yifan, Chiu, Liang-Yuan, Sui, Yongkun, Dai, Quanbin, Penumutchu, Srinivasa, Jain, Niyati, Dai, Liming, Zorman, Christian A., Tolbert, Blanton S., Sankaran, R. Mohan, Liu, Chung Chiun

Journal:

Year:

2018

Language:

english

File:

PDF, 1.68 MB

english, 2018

29

NMR Studies of Conformational Selection of hnRNP H on RNA Recognition and its Interaction with the HIV Exonic Splicing Silencer ESS2P RNA

Chiu, Liang-Yuan, Penumutchu, Srinivas, Jain, Niyati, Sugarman, Andrew, Tolbert, Blanton S.

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 47 KB

english, 2019

30

Genome wide analysis of hnRNP binding to HIV-1 RNA reveals a key role for hnRNP H1 in alternative viral mRNA splicing

Kutluay, Sebla B., Emery, Ann, Penumutchu, Srinivas, Townsend, Dana, Tenneti, Kasyap, Madison, Michaela K., Stukenbroeker, Amanda M., Powell, Chelsea, Jannain, David, Tolbert, Blanton S., Swanstrom, R

Journal:

Journal of Virology

Year:

2019

File:

PDF, 7.97 MB

2019

31

EV71 3C protease induces apoptosis by cleavage of hnRNP A1 to promote apaf-1 translation

Li, Mei-Ling, Lin, Jing-Yi, Chen, Bo-Shiun, Weng, Kuo-Feng, Shih, Shin-Ru, Calderon, Jesse Davila, Tolbert, Blanton S., Brewer, Gary, Jan, Eric

Journal:

Year:

2019

Language:

english

File:

PDF, 2.02 MB

english, 2019

32

EV71 3C protease induces apoptosis by cleavage of hnRNP A1 to promote apaf-1 translation

Li, Mei-Ling, Lin, Jing-Yi, Chen, Bo-Shiun, Weng, Kuo-Feng, Shih, Shin-Ru, Calderon, Jesse Davila, Tolbert, Blanton S., Brewer, Gary, Jan, Eric

Journal:

Year:

2019

File:

PDF, 2.02 MB

2019

33

Integrated Approaches to Reveal Mechanisms by which RNA Viruses Reprogram the Cellular Environment

Haddad, Christina, Davila-Calderon, Jesse, Tolbert, Blanton S.

Journal:

Year:

2020

File:

PDF, 1.15 MB

2020

34

IRES-targeting small molecule inhibits enterovirus 71 replication via allosteric stabilization of a ternary complex

Davila-Calderon, Jesse, Patwardhan, Neeraj N., Chiu, Liang-Yuan, Sugarman, Andrew, Cai, Zhengguo, Penutmutchu, Srinivasa R., Li, Mei-Ling, Brewer, Gary, Hargrove, Amanda E., Tolbert, Blanton S.

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.51 MB

2020

35

Introducing StructureâEnergy Concepts of RNA at the Undergraduate Level: Nearest Neighbor Thermodynamics and NMR Spectroscopy of a GAGA Tetraloop

Takor, Gaius, Morgan, Christopher E., Chiu, Liang-Yuan, Kendrick, Nashea, Clark, Emily, Jaiswal, Rohan, Tolbert, Blanton S.

Journal:

Journal of Chemical Education

Year:

2020

File:

PDF, 2.20 MB

2020

36

Editorial for âMethods to characterize virus small RNAs and RNA structuresâ

Brewer, Gary, Li, Mei-Ling, Tolbert, Blanton S.

Journal:

Year:

2020

File:

PDF, 303 KB

2020